We describe a prototype implementation of a platform that could underlie a Precision Oncology Rapid Learning system. We describe the prototype platform, and examine some important issues and details. In the Appendix we provide a complete walk-through …
PubMed related article links identify closely related articles and enhance our ability to navigate the biomedical literature. They are derived by calculating the word similarity between two articles, relating articles with overlapping word content. …
UNLABELLED: Yale Image Finder (YIF) is a publicly accessible search engine featuring a new way of retrieving biomedical images and associated papers based on the text carried inside the images. Image queries can also be issued against the image …
MOTIVATION: Proteomics researchers need to be able to quickly retrieve relevant information from the web and the biomedical literature. To improve information retrieval, we leverage the structure of the semantic web, developing an approach for …
We are interested in mapping terms from the biomedical literature to controlled terminologies. For clinical and related terms, we rely on the MetaMap program for mapping terms to the UMLS Metathesaurus, accepting term assignments that have a …
INTRODUCTION: In this work, we introduce the concept of semantic role labeling to the medical domain. We report first results of porting and adapting an existing resource, Propbank, to the medical field. Propbank is an adjunct to Penn Treebank that …
Sophisticated information technologies are needed for effective data acquisition and integration from a growing body of the biomedical literature. Successful term identification is key to getting access to the stored literature information, as it is …
The immense growth in the volume of research literature and experimental data in the field of molecular biology calls for efficient automatic methods to capture and store information. In recent years, several groups have worked on specific problems …
Knowledge on interactions between molecules in living cells is indispensable for theoretical analysis and practical applications in modern genomics and molecular biology. Building such networks relies on the assumption that the correct molecular …